Ingress has split from Wayfarer, and the Ingress map no longer syncs with the Wayfarer map as of May 23rd. More info about the split, which is due to the Scopely sale, can be found here:
There will be a new website for Ingress nominations, Recon, but it’s not fully up and running yet. Nominations and edits are being accepted in-game, and yes, that does mean that you have to submit via both PoGo and Intgress if you want them on both maps. Sorry for any confusion, but the only way to know if something becomes a stop/gym in PoGo is to go directly to that approved Wayspot.