You have additional tools installed, and this makes a difference in this case in terms of data recency.
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Here is an update for everybody:
The wayspot did get moved to the correct location now. The cell does now have 2 wayspots though, because a recalculation did not happen.
Do you mean it still has two game locations? I have seen a lot of reports that when a gym is moved, it either doesnāt recalculate, or takes quite a while to do it.
Yep, has 2 game locations. The gym and the pokestop that was already occupying that cell.
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It seems that the āRe-Calculationsā are not as definite as it should be.
There are 2 instances locally, 1 that I made the āLocation Editā about a year ago, still ā2 in a cellā and another I use quite often (could be from before the re-calcs became a thing).
I see it as āI have done my bit, itās now down to Nianticāā¦
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They should be more consistent I find.
Every time a new wayspot or edit is made in the cell it should be recalculated IMO.
It does not really matter that much now, but does look very weird ingame I can tell that.
Quick final update:
The cell has recalculated itself with the gym still in-game and the pokestop that was there now being inactive.
another hard work of mine not in-game now 
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